gcbias | The Coop lab
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The Coop lab, which is in the Department of Evolution and Ecology at UC Davis, and the Center for Population Biology. We work on a number of different aspects of evolutionary and population genetics.
gcbias | The Coop lab
1y ago
genetic_similarity_and_genetic_ancestry_groups_currentDownload ..read more
gcbias | The Coop lab
2y ago
Congratulations to Dr @sivan_yair!!!! pic.twitter.com/YHzp4pvWo4
— Graham Coop (@Graham_Coop) March 17, 2022 ..read more
gcbias | The Coop lab
2y ago
A review by Coop and Przeworski of Kathryn Paige Harden’s The Genetic lottery. This lightly revised version of review is now in print at Evolution
Click to access genetic_lottery_review_final_1_22.pdf
See a thread on the review here:
.@molly_przew and I wrote a review of @kph3k’s book, The Genetic Lottery: Why DNA matters for social equality, for @journal_evo: [pdf: https://t.co/kZBa2yt64Q ] 1/6
— Graham Coop (@Graham_Coop) January 24, 2022 ..read more
gcbias | The Coop lab
2y ago
Sivan’s new preprint on the evolution of polygenic predictions under stabilizing selection is here:
https://www.biorxiv.org/content/10.1101/2021.09.10.459833v1
Sivan’s twitter thread on the paper is here:
Excited to share my new preprint with @Graham_Coop, “Population differentiation of polygenic score predictions under stabilizing selection”
See thread of main points below! https://t.co/9hsIe7kVf6
— Sivan Yair (@sivan_yair) September 13, 2021
pdf of slides of a talk on this topic
polgenic_score_divergence_stanford_lewontin_21Download ..read more
gcbias | The Coop lab
2y ago
I filed my dissertation today and it feels AWESOME! It's been really good times with @PopBioUCD and the Coop lab . What's next? I'm excited to be joining @bryan_howie's team at @AdaptiveBiotech, applying statistics + genetics to cool problems in medicine + adaptive immunity! pic.twitter.com/HlvYOg6h4s
— Erin Calfee (@ErinCalfee) May 20, 2021 ..read more
gcbias | The Coop lab
4y ago
The second release version of “Population and Quantitative Genetics”. All of the latex, figures, etc are released under a CC-BY 3.0 licence. All of the figures have their attribution and code is provided for all of the figures produced for the book.
If you make use these notes please consider answering this questionnaire. I’m collecting this information in case it helps support further development of the notes.
What’s new? Descriptions throughout the book have been expanded. I’ve also added new figures and illustrations. Entirely new to this release:
A math appendix at the end of the book. T ..read more
gcbias | The Coop lab
4y ago
An FAQ written by Doc (Michael) Edge and Graham Coop on their paper about genetic genealogy & privacy (pdf link here).
The preprint is scheduled to appear on Oct 22nd and should be available at this link.
What is this paper about?
Our paper is about genetic privacy concerns related to a subset of direct-to-consumer (DTC) genetics services. The largest DTC genetics companies are Ancestry and 23andMe, but our paper is not directly about them—it’s about services that allow users to upload their own genetic datasets.
Several DTC genetics services, including GEDmatch, MyHeritage, FamilyTreeDNA ..read more
gcbias | The Coop lab
5y ago
Doc Edge How much does GWAS stratification drive variation in polygenic scores? Selection 1 Saturday the 22nd 9:45 AM 552 Vince Buffalo Detecting the signature of polygenic adaptation in temporal datasets Molecular Ecology 1 Sat, June 22 4:15 PM 552 Erin Calfee Parallel selection on introgression into maize from a highland endemic wild relative Gene Flow 1 Sunday the 23rd 10:00 AM 551 Sivan Yair The timing and geography of adaptive Neanderthal introgression in modern humans Gene Flow 2 Sunday the 23rd 11:30 AM 551 Matt Osmond Genetic signatures of evolutionary rescue Pop Gen Theory 2 Tuesday t ..read more